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Workbench plugins

PluginManualSupported onDownloadDeveloper

Additional Alignments

Perform alignments with ClustalO, ClustalW and MUSCLE

CLC Sequence Viewer CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

Advanced Peak Shape Tools Plugin (Beta)

Peak finding using shape information

Biomedical Genomics Workbench CLC Genomics Workbench

Advanced RNA-Seq

Advanced analysis of RNA-Seq experiments

Biomedical Genomics Workbench CLC Genomics Workbench

Annotate with GFF file

Using this plug-in it is possible to annotate a sequence from list of annotations found in a GFF file
Located in the Toolbox.

CLC Main Workbench CLC Genomics Workbench

Batch Rename

Rename files in batch by adding a prefix or a number.

CLC Sequence Viewer CLC Main Workbench Biomedical Genomics Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

Bisulfite Sequencing

Tools to analyse bisulfite-converted reads.

Biomedical Genomics Workbench CLC Genomics Workbench

Blast2GO PRO

Blast2GO PRO is an all-in-one tool for functional annotation of (novel) sequences and the analysis of annotation data.

CLC Main Workbench CLC Genomics Workbench

Blast2GO PRO Viewer

Blast2GO PRO is an all-in-one tool for functional annotation of (novel) sequences and the analysis of annotation data.

CLC Main Workbench CLC Genomics Workbench

Bookmark Navigator

With this extension you can bookmark elements in the Navigation Area.

CLC Sequence Viewer CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

CLC Genome Finishing Module

Various tools for genome finishing aimed to close and produce high quality genomes in sequencing projects.

Biomedical Genomics Workbench CLC Genomics Workbench

CLC MLST Module

MLST Module makes it easy and fast to do MultiLocus Sequence Typing.

CLC Main Workbench CLC Genomics Workbench

CLC Microbial Genomics Module

CLC Microbial Genomics Module

Biomedical Genomics Workbench CLC Genomics Workbench

CLC Workbench Client Plugin

Client plugin for connecting to a CLC Server. Compatible with the CLC Genomics Server 8.x.x and CLC Bioinformatics Database 4.7.x.

CLC Main Workbench Biomedical Genomics Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

External Applications Client Plugin - Workflow enabled

Run external applications on a CLC Server via the Workbench menu system. External applications are made available by a Server admin configuring them in the CLC Server web interface.

CLC Main Workbench Biomedical Genomics Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

Histone ChIP-Seq

Tools for Histone ChIP-Sequencing

Biomedical Genomics Workbench CLC Genomics Workbench

Ingenuity Pathway Analysis

Upload statistical comparisons of expression data to Ingenuity Pathway Analysis

Biomedical Genomics Workbench CLC Genomics Workbench

Ingenuity Variant Analysis

Run workflows of analyses that include accessing Ingenuity Variant Analysis and the Allele Frequency Community

Biomedical Genomics Workbench

PPfold

Parallel pfold implementation

CLC Sequence Viewer CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

QIAGEN GeneRead Panel Analysis Plugin

Identify and annotate variants in data generated with GeneRead DNAseq Gene Panels

Biomedical Genomics Workbench

Rapid Neighbour-Joining

A fast and memory efficient implementation of the Neighbour-Joining method with fast distance estimation.

CLC Sequence Viewer CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

Recent Items Navigator

With this extension you can keep track of recently used items in the Navigator Area.

CLC Sequence Viewer CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

Sequence Reader

The sequence reader can be used to read aloud a part of a sequence.

CLC Main Workbench CLC Genomics Workbench

SignalP

Integrated signal peptide prediction using SignalP 4.1 at http://www.cbs.dtu.dk/services/SignalP.
(Requires an Internet connection).

CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

TMHMM

Integrated transmembrane helix prediction using TMHMM at http://www.cbs.dtu.dk/services/TMHMM.
(Requires an Internet connection).

CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

TRANSFAC TFBS

The TRANSFAC TFBS extension can be used to search for putative transcription factor binding sites in DNA sequences.

CLC Main Workbench Biomedical Genomics Workbench CLC Genomics Workbench

Transcript Discovery (Beta)

The transcript discovery plug-in enables you to map RNA-Seq reads to a genomic reference and predicts transcripts and genes.

CLC Genomics Workbench

Transfac (Free)

The TRANSFAC extension can be used to search for putative transcription factor binding sites in DNA sequences.

CLC Main Workbench CLC Genomics Workbench

Vector NTI import

Vector NTI data import functionality.

CLC Sequence Viewer CLC Main Workbench CLC Genomics Workbench CLC Drug Discovery Workbench

Server plugins

PluginManualSupported onDownloadDeveloper

Additional Alignments Server Plugin

Perform alignments with ClustalO, ClustalW and MUSCLE

Biomedical Genomics Server Solution CLC Genomics Server

Advanced Peak Shape Tools Server Plugin (Beta)

Peak finding using shape information

Biomedical Genomics Server Solution CLC Genomics Server

Advanced RNA-Seq Server Plugin

Advanced analysis of RNA-Seq experiments

Biomedical Genomics Server Solution CLC Genomics Server

Annotate with GFF file server plugin

Using this plug-in it is possible to annotate a sequence from list of annotations found in a GFF file

Biomedical Genomics Server Solution CLC Genomics Server

Bisulfite Sequencing Server Plugin

Tools to analyse bisulfite-converted reads.

Biomedical Genomics Server Solution CLC Genomics Server

CLC Genome Finishing Server Extension

Various tools for genome finishing aimed to close and produce high quality genomes in sequencing projects.

Biomedical Genomics Server Solution CLC Genomics Server

CLC Microbial Genomics Server Extension

CLC Microbial Genomics Server Extension

Biomedical Genomics Server Solution CLC Genomics Server

Histone ChIP-Seq Server Plugin

Tools for Histone ChIP-Sequencing

Biomedical Genomics Server Solution CLC Genomics Server

Ingenuity Pathway Analysis Server Plugin

Upload statistical comparisons of expression data to Ingenuity Pathway Analysis

Biomedical Genomics Server Solution CLC Genomics Server

Ingenuity Variant Analysis Server Plugin

Run workflows of analyses that include accessing Ingenuity Variant Analysis and the Allele Frequency Community

Biomedical Genomics Server Solution CLC Genomics Server

QIAGEN GeneRead Panel Analysis Server Plugin

The QIAGEN GeneRead panel analysis server plugin

Biomedical Genomics Server Solution

Transcript Discovery Server Plugin (Beta)

The transcript discovery plug-in enables you to map RNA-Seq reads to a genomic reference and predicts transcripts and genes.

Biomedical Genomics Server Solution CLC Genomics Server

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