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Plugin

Annotate with GFF file

The Annotate Sequence with GFF File makes it very easy to annotate a sequence with annotations from a GFF file (Generic Feature Format).

The Annotate Sequence with GFF File makes it very easy to annotate a sequence with annotations from a GFF file (Generic Feature Format). A GFF file does not contain any sequence information, it only contains a list of annotations. You can read more about the format at http://www.sanger.ac.uk/Software/formats/GFF.

You can also use GTF files (Gene Transfer Format). This format is used by among others the UCSC Genome Browser at http://genome.ucsc.edu . If you download an annotation track (e.g. SNPs, repeats) you can get this as a GTF file.

Note! GTF-files downloaded from the UCSC genome browser are not compatible with the RNA-Seq Analysis of CLC Genomics Workbench because the gene and transcript annotations cannot be matched. See examples, guides and read more about the plug-in in the GFF Plug-in User Manual

Guides

Further Reading

Installation

The plugin is easily installed from within the Workbench:

  1. Click Plugins in the Toolbar
  2. Click the tab Download Plugins
  3. Select the plugin you wish to install
  4. Click the Download and Install button

Download from www.clcbio.com

Alternatively, you can download the plugin.

Workbench Download Server Download