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Plugin

PPfold Plug-in

PPfold is a program to predict the consensus secondary structure of RNA alignments. It is a multithreaded and improved version of the popular pfold program.

The PPfold plug-in enables the use of PPfold inside the CLC Workbenches.

See also: [Sukosd et al, 2011]

Key features

  • Predict the consensus secondary structure of RNA sequences and alignments
  • Produce dotplots of basepairing probabilities
  • Export sequences and alignments in various structure formats
Guides

Further Reading

User Manual
Download  

Installation

The plugin is easily installed from within the Workbench:

  1. Click Plugins in the Toolbar
  2. Click the tab Download Plugins
  3. Select the plugin you wish to install
  4. Click the Download and Install button

Download from www.clcbio.com

Alternatively, you can download the plugin.

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