PPfold is a program to predict the consensus secondary structure of RNA alignments. It is a multithreaded and improved version of the popular pfold program.
The PPfold plug-in enables the use of PPfold inside the CLC Workbenches.
See also: [Sukosd et al, 2011]
- Predict the consensus secondary structure of RNA sequences and alignments
- Produce dotplots of basepairing probabilities
- Export sequences and alignments in various structure formats