CLC bio: Next Gen. Sequencing

Show details | Hide details

Next Gen. Sequencing

	de novo assembly of mixed datasets
	Contig report
	Reference assembly of mixed datasets
	Detection of large scale mutations and rearrangements
	Masking of reference assembly based on annotation like e.g. exons
	Interactive and zoom-able viewing of genome assemblies
	Advanced SNP detection, including choice of ploidity
	SNP reporting
	Advanced DIP detection, including choice of ploidity
	DIP reporting

Transcriptomics

	Support for micro-array based expression data.
	Support for sequencing based (RNA-seq) expression data
	Calculation of gene expression measures (RPKM)
	Advanced RNA-seqoutputs comparing expression levels of count-based expresssion measures
	Discovery of novel transcripts/exons
	Interactive views of assemblies and derived gene expression data
	Visualization: Interactive heat map, table and scatter plot views
	Transformation and normalization tools
	Quality control tools
	Two- or multiple group comparisons
	Multiple testing corrected p-values (Bonferroni and/or FDR)
	Several clustering algorithms
	Ability to import NetAffx, Illumina annotation arrays and adding annotation to experiments
	Tools for Gene Set Enrichment Analysis (GSEA) and for Hyper-Geometric based tests for overrepresented annotation categories (e.g. 'GO'stats or specific protein pathways)
	Facility for annotating sequences from GFF or GTF files

	Chromatin immunoprecipitation sequencing analysis
	Peak finding and peak refinement
	Graph and table of background distribution and false discovery rate
	Peak table and annotations

General NGS features

	Support for multiplex sequencing by file name
	Support for multiplex sequencing by sample-specific tag
	Quality reporting and statistics on raw data

Show details | Hide details

Get in touch

with one of our offices or resellers near you!

Download trial

and try out one of our products free for up to four weeks!

CLC bio Webshop

Find selected products and prices in our online shop.