Users of CLCs bioinformatics software for DNA, RNA, and protein sequence analyses enjoy the user-friendliness, the advanced bioinformatics functionalities, and the top-quality user support that we provide.
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Desktop software  Compare desktop applications  Other Bioinformatics features  Sequence alignment

Other Bioinformatics features
Sequence alignment
Multiple sequence alignments (Two proprietary algorithms)
ClustalW
Muscle
T-Coffee
MAFFT
Kalign
Advanced re-alignment and fix-point alignment options
Advanced alignment editing options
Join multiple alignments into one
Consensus sequence determination and management
Conservation score along sequences
Sequence logo graphs along DNA, RNA, and protein alignments
Gap fraction graphs
Copy features between sequences in alignments
Advanced pairwise comparison

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      • Core software features
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        • RNA secondary structure
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        • Sequence alignment
          • Multiple sequence alignments (Two proprietary algorithms)
          • ClustalW
          • Muscle
          • T-Coffee
          • MAFFT
          • Kalign
          • Advanced re-alignment and fix-point alignment options
          • Advanced alignment editing options
          • Join multiple alignments into one
          • Consensus sequence determination and management
          • Conservation score along sequences
          • Sequence logo graphs along DNA, RNA, and protein alignments
          • Gap fraction graphs
          • Copy features between sequences in alignments
          • Advanced pairwise comparison
        • Phylogenetic trees
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