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G/C content along sequences
You can analyze the G/C content of a part of the sequence, showing it as a gradient of colors and/or as a graph below the sequence.
Available user options:
- Window length. Determines the length of the part of the sequence to calculate. A window length of 9 will calculate the G/C content for the nucleotide in question plus the 4 nucleotides to the left and the 4 nucleotides to the right. A narrow window will focus on small fluctuations in the G/C content level, whereas a wider window will show fluctuations between larger parts of the sequence.
- Foreground color. Colors the residues depending on the G/C content. Two sliders allow you to choose a lower threshold and an upper threshold.
- Background color. Sets a background color of the residues using a gradient in the same way as described above.
- Graph. If you would like the G/C content shown as a graph, these user options are available:
- Graph height
- Graph type (Line plot/Bar plot/Color bar)
- Graph color
