Through innovative technology CLC bio have created the CLC Bioinformatics Cube which runs Smith Waterman up to 125 times faster than a 3 GHz desktop computer, and acceptably close to the speed of BLAST. Smith Waterman searches taking 14 hours on the desktop are thus reduced to around 7 minutes on the Cube. Visit www.clccell.com

High-Performance Computing

Using FPGA-based hardware technology and SIMD-based software technology, CLC bio's High Performance Computing solutions accelerates

  • Assembly of Next Generation Sequencing data
  • Hmmsearch
  • Smith-Waterman based BLAST searches
  • ClustalW alignments

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CLC Assembly Cell

Interested ind super-fast assembly of Next Generation Sequencing data?
You can read about our solution here...

CLC Bioinformatics Cell

HMMER, Clustal W, and Smith-Waterman based BLAST searches
The Cell utilizes a special technology to speed up your server or cluster. For each node the Cell presently speeds up HMMER (30 times), high quality database searches (130 times), and Clustal W alignments. (10 times)
Read more at our special website about the cutting-edge Bioinformatics Cell
Read about our cluster-enabled HPS solution

High-speed plug-ins

HMMER, Clustal W, and Smith-Waterman based BLAST searches
SIMD-accelerated versions of the algorithms listed below for desktop and laptop computers, easily installed as individual plug-ins through the graphical user-interface in the workbench
Read more about CLC High-Speed HMMER here
Read more about CLC High-Speed Smith-Waterman here
Read more about CLC High-Speed ClustalW here