CLC bio releases module for microbial genome finishing
Aarhus, Denmark -- March 12, 2013 -- Today CLC bio released CLC Microbial Genome Finishing Module, an add-on module to CLC Genomics Workbench, which has been developed to help finish the assembly of small genomes.
CLC Microbial Genome Finishing Module is a collection of tools with different functionalities to identify, visualize, and solve problems in genome assemblies. The tools are:
- Align Contigs. Aligns contigs to a reference sequence or, in the absence of a reference, to the contigs themselves.
- Analyze Contigs. Analyzes the contig read mappings for possible misassemblies, single strandedness, coverage, broken pairs, and unaligned ends.
- Collect Paired Reads Statistics. Detects paired reads that map to separate contigs.
- Create Amplicons. Places amplicon annotations on sequences. Used before the Primer Creator to subdivide regions of interest into fragments of suitable sizes.
- Create Primers. Automates primer design for re-sequencing purposes.
- Add Reads to Contigs. Adds additional sequence data to existing contigs.
- Sample Reads. Allows a user-defined reduction in the number of reads.
- Find Sequence. Searches for names, sequence strings, or annotations in de novo assemblies, mappings, and sequencing data.
- Reassemble Regions. Reassembles selected regions in contigs. Useful for solving small misassemblies.
- Extend Contigs. Extends contigs with existing reads.
More about CLC Microbial Genome Finishing Module
Click here to get more information.
Click here to download CLC Microbial Genome Finishing Module.
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