Application notes

Application notes on different subjects,
ranging from de novo assembly of
paired-end plant transcriptome data to amplicon analysis of lung cancer.

 
 

Medical genomics

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Identification & comparison of BRCA1 and BRCA2 variants

Application note on analyzing amplicon sequencing data and identifying cancer relevant variants using CLC Genomics Workbench

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Analysis and comparison of samples from patients with inherited hearing loss

Application note on disease- associated variant detection using CLC Genomics Workbench

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Whole Genome Trio Analysis

Application note on analyzing trio-based next-generation sequencing data using CLC Genomics Workbench

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Amplicon analysis of lung cancer samples

Application note on Amplicon Analysis using CLC Genomics Workbench

Plant & Animal Genomics

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RNA-Seq analysis using de novo assembled transcriptome as reference

Application note on expression analysis using CLC Genomics Workbench

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Comparative analysis of three bovine genomes

Application note on comparative genomics data analysis, using Illumina exome data from Bos taurus (taurine), Bos indicus (zebu), and Bison bison (bison), analyzed and visualized through Genomics Gateway in CLC Genomics Workbench

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Expression analysis of mRNA-Seq reads from Arabidopsis tissues

Application note on mRNA-Seq analysis using CLC Genomics Workbench

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De novo assembly of paired-end plant transcriptome data

Application note on de novo assembly of a plant transcriptome using Illumina paired-end sequencing data from Lactuca serriola (prickly lettuce) in CLC Genomics Workbench