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Papers

Our software is frequently cited
in independent research papers and
published in Nature, Science, and PLoS,
as well as other high-impact journals.

Published papers

Selected scientific papers citing our software

2014

2013

2012

2011

2010

2009

2008

2007

Books

Selected books citing our software

2011

  • Epigenetics in Male Reproduction: A Practical Introduction to the Informatics of Next Generation Sequencing
    Adrian E. Platts, Claudia Lalancette and Stephen A. Krawetz

    Epigenetics and Human Health
    CLC Genomics Workbench

  • Next Generation Sequencing and Whole Genome Selection in Aquaculture
    Zhanjiang (John) Liu

    Wiley-Blackwell
    CLC Genomics Workbench


Papers authored by our experts

Selected papers

2013

2012

  • Water-in-oil micro-emulsion enhances the secondary structure of a protein by confinement
    Shipovskov S, Oliveira CL, Hoffmann SV, Schauser L, Sutherland DS, Besenbacher F, Pedersen JS

    Chemphyschem. 2012 Sep 17;13(13):3179-84. doi: 10.1002/cphc.201200295

    http://onlinelibrary.wiley.com/doi/10.1002/cphc.201200295/abstract

  • Tracing Cytoplasmic Ca2+ Ion and Water Access Points in the Ca2+-ATPase
  • Modeling the Self-Assembly and Stability of DHPC Micelles Using Atomic Resolution and Coarse Grained MD Simulations
    Kraft, J. F.; Vestergaard, M.; Schiøtt, B.; Thøgersen, L.

    J. Chem. Theory and Comput. 8, 1556-1569 (2012)

    http://pubs.acs.org/doi/abs/10.1021/ct200921u?journalCode=jctcce

  • Flexible P-type ATPases interacting with the membrane
    Thøgersen, L.; Nissen, P.

    Curr. Opinion in Struct. Biol. 22, 491-499 (2012)

    http://www.sciencedirect.com/science/article/pii/S0959440X12000942

  • Oral transmission as a route of infection for viral haemorrhagic septicaemia virus in rainbow trout, Oncorhynchus mykiss (Walbaum)
    Schönherz AA, Hansen MH, Jørgensen HB, Berg P, Lorenzen N, Einer-Jensen K.

    J Fish Dis. 2012 Jun;35(6):395-406. doi: 10.1111/j.1365-2761.2012.01358.x

    http://www.ncbi.nlm.nih.gov/pubmed/22524457

  • European freshwater VHSV genotype Ia isolates divide into two distinct subpopulations
    Kahns S, Skall HF, Kaas RS, Korsholm H, Bang Jensen B, Jonstrup SP, Dodge MJ, Einer-Jensen K, Stone D, Olesen NJ.

    Dis Aquat Organ. 2012 May 15;99(1):23-35. doi: 10.3354/dao02444

    http://www.ncbi.nlm.nih.gov/pubmed/22585300

  • Typing of viral hemorrhagic septicemia virus by monoclonal antibodies
    Ito T, Kurita J, Sano M, Skall HF, Lorenzen N, Einer-Jensen K, Olesen NJ.

    J Gen Virol. 2012 Dec;93(Pt 12):2546-57. doi: 10.1099/vir.0.043091-0

    http://www.ncbi.nlm.nih.gov/pubmed/22971820

  • Approaches towards DNA vaccination against a skin ciliate parasite in fish
    von Gersdorff Jørgensen L, Sigh J, Kania PW, Holten-Andersen L, Buchmann K, Clark T, Rasmussen JS, Einer-Jensen K, Lorenzen N.

    PLoS One. 2012;7(11):e48129. doi: 10.1371/journal.pone.0048129

    http://www.ncbi.nlm.nih.gov/pubmed/23144852

  • Inter-species transmission of viral haemorrhagic septicaemia virus (VHSV) from turbot (Scophthalmus maximus) to rainbow trout (Onchorhynchus mykiss)
    Schönherz AA, Lorenzen N, Einer-Jensen K.

    J Gen Virol. 2012 Dec 12. [Epub ahead of print]

    http://www.ncbi.nlm.nih.gov/pubmed/23239574

  • Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling
    Simonsen M, Maetschke SR, Ragan MA.

    Bioinformatics. 2012 Mar 15;28(6):851-7. doi: 10.1093/bioinformatics/btr720

    http://www.ncbi.nlm.nih.gov/pubmed/22219205

  • Gene Ontology-driven inference of protein-protein interactions using inducers
    Maetschke SR, Simonsen M, Davis MJ, Ragan MA

    Bioinformatics. 2012 Jan 1;28(1):69-75. doi: 10.1093/bioinformatics/btr610

    http://www.ncbi.nlm.nih.gov/pubmed/22057159

  • The tomato genome sequence provides insights into fleshy fruit evolution
    The Tomato Genome Consortium

    Nature 485, 635–641 (2012) doi:10.1038/nature11119

    http://www.nature.com/nature/journal/v485/n7400/full/nature11119.html#/author-information

  • First draft genome sequence of the Japanese eel, Anguilla japonica
    Henkel CV, Dirks RP, de Wijze DL, Minegishi Y, Aoyama J, Jansen HJ, Turner B, Knudsen B, Bundgaard M, Hvam KL, Boetzer M, Pirovano W, Weltzien FA, Dufour S, Tsukamoto K, Spaink HP, van den Thillart GE

    Gene. 2012 Dec 15;511(2):195-201. doi: 10.1016/j.gene.2012.09.064. Epub 2012 Sep 29.
    CLC Sequence Viewer
    http://www.sciencedirect.com/science/article/pii/S0378111912011730

  • Alpharetroviral self-inactivating vectors: long-term transgene expression in murine hematopoietic cells and low genotoxicity
    Suerth JD, Maetzig T, Brugman MH, Heinz N, Appelt JU, Kaufmann KB, Schmidt M, Grez M, Modlich U, Baum C, Schambach A.

    Mol Ther. 2012 May;20(5):1022-32. doi: 10.1038/mt.2011.309

    http://www.ncbi.nlm.nih.gov/pubmed/22334016

  • Integration frequency and intermolecular recombination of rAAV vectors in non-human primate skeletal muscle and liver
    Nowrouzi A, Penaud-Budloo M, Kaeppel C, Appelt U, Le Guiner C, Moullier P, von Kalle C, Snyder RO, Schmidt M.

    Mol Ther. 2012 Jun;20(6):1177-86. doi: 10.1038/mt.2012.47

    http://www.ncbi.nlm.nih.gov/pubmed/22453768

  • Bioinformatical Clonality Analysis of Next Generation Sequencing Derived Viral Vector Integration Sites
    Arens A, Appelt JU, et al.

    Hum Gene Ther Methods. 2012 Jun 29.

    http://www.ncbi.nlm.nih.gov/pubmed/22746177

  • Comparative clonal analysis of reconstitution kinetics after transplantation of hematopoietic stem cells gene marked with a lentiviral SIN or a γ-retroviral LTR vector
    Cornils K, Bartholomae CC, Thielecke L, Lange C, Arens A, et al.

    Exp Hematol. 2012 Sep 16. pii: S0301-472X(12)00384-0. doi: 10.1016/j.exphem.2012.09.003

    http://www.ncbi.nlm.nih.gov/pubmed/22989760

  • PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data
    Sükösd Z, Knudsen B, Kjems J, Pedersen CN

    Bioinformatics. 2012 Oct 15;28(20):2691-2. doi: 10.1093/bioinformatics/bts488

2011

  • Mutual adaptation of a membrane protein and its lipid bilayer during conformational changes
    Sonntag, Y.; Musgaard, M.; Olesen, C.; Schiøtt, B.; Møller, J. V.; Nissen, P.; Thøgersen, L.

    Nature Comm. 2, 304 (2011)

    http://www.nature.com/ncomms/journal/v2/n5/full/ncomms1307.html

  • Protonation States of Important Acidic Residues in the Central Ca2+ Ion Binding Sites of the Ca2+-ATPase: A Molecular Modeling Study
    Musgaard, M.; Thøgersen, L.; Schiøtt, B.

    Biochemistry 50, 11109-11120 (2011)

    http://pubs.acs.org/doi/abs/10.1021/bi201164b

  • Inference of Large Phylogenies Using Neighbour-Joining
    Simonsen M, Mailund T, Pedersen CNS

    Communications in Computer and Information Science Volume 127, 2011, pp 334-344

    http://link.springer.com/chapter/10.1007/978-3-642-18472-7_26

  • Rapid computation of distance estimators from nucleotide and amino acid alignments
    Simonsen M, Pedersen CNS

    SAC '11 Proceedings of the 2011 ACM Symposium on Applied Computing Pages 89-93 ; doi>10.1145/1982185.1982208

  • GPU-accelerated high-accuracy molecular docking using guided differential evolution: real world applications
    Simonsen M, Pedersen CNS, Christensen MH, and Thomsen R

    GECCO '11 Proceedings of the 13th annual conference on Genetic and evolutionary computation Pages 1803-1810; doi>10.1145/2001576.2001818

    http://dl.acm.org/citation.cfm?id=2001818

  • The Medicago genome provides insight into the evolution of rhizobial symbioses
    Young ND, Debelle F, Oldroyd GED, et al.

    Nature 480, 520–524 (22 December 2011), doi:10.1038/nature10625

    http://www.nature.com/nature/journal/v480/n7378/full/nature10625.html

  • Clonal inventory screens uncover monoclonality following serial transplantation of MGMT P140K-transduced stem cells and dose-intense chemotherapy
    Giordano FA, Sorg UR, Appelt JU, Lachmann N, Bleier S, Roeder I, Kleff V, Flasshove M, Zeller WJ, Allgayer H, von Kalle C, Fruehauf S, Moritz T, Laufs S.

    Hum Gene Ther. 2011 Jun;22(6):697-710

    http://www.ncbi.nlm.nih.gov/pubmed/21319998

  • Stable Human FIX Expression After 0.9G Intrauterine Gene Transfer of Self-complementary Adeno-associated Viral Vector 5 and 8 in Macaques
    Mattar CN, Nathwani AC, Waddington SN, Dighe N, Kaeppel C, Nowrouzi A, Mcintosh J, Johana NB, Ogden B, Fisk NM, Davidoff AM, David A, Peebles D, Valentine MB, Appelt JU, von Kalle C, Schmidt M, Biswas A, Choolani M, Chan JK.

    Mol Ther. 2011 Nov;19(11):1950-60. doi: 10.1038/mt.2011.107

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222517/

  • Lentiviral vector integration profiles differ in rodent postmitotic tissues
    Bartholomae CC, Arens A, Balaggan KS, Yáñez-Muñoz RJ, Montini E, Howe SJ, Paruzynski A, Korn B, Appelt JU, Macneil A, Cesana D, Abel U, Glimm H, Naldini L, Ali RR, Thrasher AJ, von Kalle C, Schmidt M.

    Mol Ther. 2011 Apr;19(4):703-10

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3070105/

  • Hepatocyte-targeted expression by integrase-defective lentiviral vectors induces antigen-specific tolerance in mice with low genotoxic risk
    Mátrai J, Cantore A, Bartholomae CC, Annoni A, Wang W, Acosta-Sanchez A, Samara-Kuko E, De Waele L, Ma L, Genovese P, Damo M, Arens A, Goudy K, Nichols TC, von Kalle C, L Chuah MK, Roncarolo MG, Schmidt M, Vandendriessche T, Naldini L.

    Hepatology. 2011 May;53(5):1696-707. doi: 10.1002/hep.24230

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3112259/

  • An unbiased genome-wide analysis of zinc-finger nuclease specificity
    Gabriel R, Lombardo A, Arens A, et al.

    Nat Biotechnol. 2011 Aug 7;29(9):816-23. doi: 10.1038/nbt.1948

    http://www.ncbi.nlm.nih.gov/pubmed/21822255

  • Insertion Sites in Engrafted Cells Cluster Within a Limited Repertoire of Genomic Areas After Gammaretroviral Vector Gene Therapy
    Deichmann A, Brugman MH, Bartholomae CC, Schwarzwaelder K, Verstegen MM, Howe SJ, Arens A, Ott MG, Hoelzer D, et al.

    Mol Ther. 2011 Nov;19(11):2031-9. doi: 10.1038/mt.2011.178

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222531/

  • Retroviral Gene Therapy for X-linked Chronic Granulomatous Disease: Results From Phase I/II Trial
    Kang HJ, Bartholomae CC, Paruzynski A, Arens A, et al.

    Mol Ther. 2011 Nov;19(11):2092-101. doi: 10.1038/mt.2011.166

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222528/

  • Distinct types of tumor-initiating cells form human colon cancer tumors and metastases
    Dieter SM, Ball CR, Hoffmann CM, Nowrouzi A, Herbst F, Zavidij O, Abel U, Arens A, Weichert W, Brand K, Koch M, Weitz J, Schmidt M, von Kalle C, Glimm H.

    Cell Stem Cell. 2011 Oct 4;9(4):357-65. doi: 10.1016/j.stem.2011.08.010

    http://www.ncbi.nlm.nih.gov/pubmed/21982235

  • GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution
    Simonsen M, Thomsen R, Christensen MH, Pedersen CNS

    GECCO 2011 conference

    http://dl.acm.org/citation.cfm?id=2001818

  • Molecular Docking with Ligand Attached Water
    Lie MA, Thomsen R, Pedersen CNS, Schiøtt B, Christensen MH

    J. Chem. Inf. Model., 2011, 51 (4), pp 909–917 DOI: 10.1021/ci100510m

    http://pubs.acs.org/doi/abs/10.1021/ci100510m

  • Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
    Sükösd Z, Knudsen B, Vaerum M, Kjems J, Andersen ES

    BMC Bioinformatics. 2011 Apr 18;12:103

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102635/

2010

  • Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis
    Branscheid A, Sieh D, Pant BD, May P, Devers EA, Elkrog A, Schauser L, Scheible WR, Krajinski F

    Mol Plant Microbe Interact. 2010 Jul;23(7):915-26. doi: 10.1094/MPMI-23-7-0915

    http://apsjournals.apsnet.org/doi/abs/10.1094/MPMI-23-7-0915

  • QuantProReloaded: Quantitative Analysis of Microspot Immunoassays
    Anika Joecker, Johanna Sonntag, Frauke Henjes, Frank Goetschel, Achim Tresch, Tim Beissbarth, Stefan Wiemann, and Ulrike Korf

    Bioinformatics 2010, doi:10.1093/bioinformatics/btq443

    http://bioinformatics.oxfordjournals.org/content/early/2010/08/12/bioinformatics.btq443.abstract

  • Sparse Learner Boosting for Gene Expression Data
    Mari Pritchard

    IPSJ Transactions on Bioinformatics Vol. 3 (2010) pp. 54-61

    https://www.jstage.jst.go.jp/article/ipsjtbio/3/0/3_0_54/_article

  • Analysis of self-inactivating lentiviral vector integration sites and flanking gene expression in human peripheral blood progenitor cells after alkylator chemotherapy
    Grund N, Maier P, Giordano FA, Appelt JU, Zucknick M, Li L, Wenz F, Zeller WJ, Fruehauf S, Allgayer H, Laufs S.

    Hum Gene Ther. 2010 Aug;21(8):943-56

    http://www.ncbi.nlm.nih.gov/pubmed/20210626

  • Genome-wide high-throughput integrome analyses by nrLAM-PCR and next-generation sequencing
    Paruzynski A, Arens A, Gabriel R, Bartholomae CC, Scholz S, Wang W, Wolf S, Glimm H, Schmidt M, von Kalle C.

    Nat Protoc. 2010 Aug;5(8):1379-95

    http://www.ncbi.nlm.nih.gov/pubmed/20671722

  • Structure of nanoscale truncated octahedral DNA cages: variation of single-stranded linker regions and influence on assembly yields
    Oliveira CL, Juul S, Jørgensen HL, Knudsen B, Tordrup D, Oteri F, Falconi M, Koch J, Desideri A, Pedersen JS, Andersen FF, Knudsen BR

    ACS Nano. 2010 Mar 23;4(3):1367-76.PMID: 20146442

    http://www.ncbi.nlm.nih.gov/pubmed/20146442

  • A Computer Simulator for Assessing the Different Challenges and Strategies of De Novo Sequence Assembly
    Bjarne Knudsen, Roald Forsberg and Michael M. Miyamoto

    Genes - Special Issue Next Generation DNA Sequencing

    http://www.mdpi.com/2073-4425/1/2/263/

2009

  • An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes
    Bertioli DJ, Moretzsohn MC, Madsen LH, Sandal N, Leal-Bertioli SC, Guimarães PM, Hougaard BK, Fredslund J, Schauser L, Nielsen AM, Sato S, Tabata S, Cannon SB, Stougaard J

    BMC Genomics. 2009 Jan 23;10:45. doi: 10.1186/1471-2164-10-45

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656529/

  • Using biological networks to search for interacting loci in genome-wide association studies
    Emily M, Mailund T, Hein J, Schauser L, Schierup MH

    Eur J Hum Genet. 2009 Oct;17(10):1231-40. doi: 10.1038/ejhg.2009.15

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2986645/

  • Dissection of symbiosis and organ development by integrated transcriptome analysis of lotus japonicus mutant and wild-type plants
    Høgslund N, Radutoiu S, Krusell L, Voroshilova V, Hannah MA, Goffard N, Sanchez DH, Lippold F, Ott T, Sato S, Tabata S, Liboriussen P, Lohmann GV, Schauser L, Weiller GF, Udvardi MK, Stougaard J

    PLoS One. 2009 Aug 7;4(8):e6556. doi: 10.1371/journal.pone.0006556

    http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0006556

  • Semiquantitative Analysis of Arabidopsis RNA by Reverse Transcription Followed by PCR Using Mimics
    I Kardailsky

    Cold Spring Harb Protoc; 2009; doi:10.1101/pdb.prot5297

    http://cshprotocols.cshlp.org/content/2009/9/pdb.prot5297.abstract

  • Incorporation of Antimicrobial Peptides into Membranes: A Combined Liquid-State NMR and Molecular Dynamics Study of Alamethicin in DMPC/DHPC Bicelles
    Dittmer, J.; Thøgersen, L.; Underhaug, J.; Bertelsen, K.; Vosegaard, T.; Pedersen, J. M.; Schiøtt, B.; Tajkhorshid, E.; Skrydstrup, T.; Nielsen, N. C.

    J. Phys. Chem. B 113, 6928-6937 (2009)

    http://pubs.acs.org/doi/abs/10.1021/jp811494p?journalCode=jpcbfk

  • Residue-Specific Information about the Dynamics of Antimicrobial Peptides from 1H−15N and 2H Solid-State NMR Spectroscopy
    Bertelsen, K.; Paaske, B.; Thøgersen, L.; Tajkhorshid, E.; Schiøtt, B.; Skrydstrup, T.; Nielsen, N. C.; Vosegaard, T.

    J. Am. Chem. Soc. 131, 18335-18342 (2009)

    http://pubs.acs.org/doi/abs/10.1021/ja908604u

  • PEP1 regulates perennial flowering in Arabis alpina
    Renhou Wang, Sara Farrona, Coral Vincent, Anika Joecker, Heiko Schoof, Franziska Turck, Carlos Alonso-Blanco, George Coupland & Maria C. Albani

    Nature 459, 423-427 (21 May 2009) | doi:10.1038/nature07988

    http://www.nature.com/nature/journal/v459/n7245/full/nature07988.html

  • A Snapshot of the Emerging Tomato Genome Sequence
    Mueller LA, Lankhorst RK, Tanksley SD, et al.

    Plant Gen. 2009 2: 78–92 10.3835/plantgenome2008.08.0005

    https://www.crops.org/publications/tpg/articles/2/1/78

  • Prediction of the benefit of trastuzumab (T)-based therapy by the change of gene expression of peripheral blood mononuclear cells (PBMC)
    C. Shimizu, K. Tamura, F. Koizumi, O. Komori, M. Pritchard, M. H. Mollah, S. Eguchi and Y. Fujiwara

    Journal of Clinical Oncology, 2009, Vol 27, No 15S (May 20 Supplement), 2009: e14578

    http://meeting.ascopubs.org/cgi/content/abstract/27/15S/e14578

  • QuickMap: a public tool for large-scale gene therapy vector insertion site mapping and analysis
    Appelt JU, Giordano FA, Ecker M, Roeder I, Grund N, Hotz-Wagenblatt A, Opelz G, Zeller WJ, Allgayer H, Fruehauf S, Laufs S.

    Gene Ther. 2009 Jul;16(7):885-93

    http://www.ncbi.nlm.nih.gov/pubmed/19387483

  • Cold spots in hot spots: transcription start sites of active genes are spared from HIV vector integration
    Giordano FA, Appelt JU, Zucknick M, Abba M, Zeller WJ, Fruehauf S, Allgayer H, Laufs S.

    AIDS. 2009 Nov 27;23(18):2535-7

    http://www.ncbi.nlm.nih.gov/pubmed/19841571

  • Comprehensive genomic access to vector integration in clinical gene therapy
    Gabriel R, Eckenberg R, Paruzynski A, Bartholomae CC, Nowrouzi A, Arens A, et al.

    Nat Med. 2009 Dec;15(12):1431-6

    http://www.ncbi.nlm.nih.gov/pubmed/19966782

  • Accurate and fast methods to estimate the population mutation rate from error prone sequences
    Knudsen B, Miyamoto MM

    BMC Bioinformatics 11;10:247.PMID: 19671163

    http://www.ncbi.nlm.nih.gov/pubmed/19671163

2008

  • An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes
    Hougaard BK, Madsen LH, Sandal N, de Carvalho Moretzsohn M, Fredslund J, Schauser L, Nielsen AM, Rohde T, Sato S, Tabata S, Bertioli DJ, Stougaard J

    Genetics. 2008 Aug;179(4):2299-312. doi: 10.1534/genetics.108.090084

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516099/

  • The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
    L. Shi, W. D. Jones, R. V. Jensen,, S. C. Harris, R. G. Perkins, F. M. Goodsaid, L. Guo, L. J. Croner, C. Boysen, et al.

    BMC Bioinformatics, 9, Suppl 9:S10, 2008

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2537561/

  • Effects of Selenomethionine on the Gene Expression Profile of Cloned Human Prostate Cancer Cells Representing a Phenotypic Continuum of Cancer Progression
    J. Stewart, J. Ware, C. Boysen, S. Gulati, Z. Zhou, S. Rosenfeld, L. Kopelovich and A. R. Kennedy

    Nutrition and Cancer, 60, 826-836, 2008

    http://www.ncbi.nlm.nih.gov/pubmed/19005982

  • Resolution Enhancement in Solid-State NMR of Oriented Membrane Proteins by Anisotropic Differential Linebroadening
    Vosegaard, T.; Bertelsen, K.; Pedersen, J. M.; Thøgersen, L.; Schiøtt, B.; Tajkhorshid, E.; Skrydstrup, T.; Nielsen, N. C.

    J. Am. Chem. Soc. 130, 5028-5029 (2008)

    http://pubs.acs.org/doi/abs/10.1021/ja8000612?journalCode=jacsat

  • The augmented Roothaan–Hall method for optimizing Hartree–Fock and Kohn–Sham density matrices
    Høst, S.; Olsen, J.; Jansik, B.; Thøgersen, L.; Jørgensen, P.; Helgaker, T.

    J. Chem. Phys. 129, 124106 (2008)

    http://jcp.aip.org/resource/1/jcpsa6/v129/i12/p124106_s1?isAuthorized=no

  • Peptide Aggregation and Pore Formation in a Lipid Bilayer: A Combined Coarse-Grained and All Atom Molecular Dynamics Study
    Thøgersen, L.; Schiøtt, B.; Vosegaard, T.; Nielsen, N. C.; Tajkhorshid, E.

    Biophys. J. 95, 4337-4347 (2008)

    http://www.cell.com/biophysj/abstract/S0006-3495%2808%2978572-2

  • Rapid Neighbour-Joining
    Simonsen M, Mailund T, Pedersen CNS

    WABI '08 Proceedings of the 8th international workshop on Algorithms in Bioinformatics Pages 113 - 122 ; doi>10.1007/978-3-540-87361-7_10

    http://dl.acm.org/citation.cfm?id=1433575

  • Protein function prediction and annotation in an integrated environment powered by web services (AFAWE)
    Anika Jöcker, Fabian Hoffmann, Andreas Groscurth and Heiko Schoof

    Bioinformatics (2008) 24 (20): 2393-2394. doi: 10.1093/bioinformatics/btn394

    http://bioinformatics.oxfordjournals.org/content/24/20/2393.full

  • Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis
    Kasper Thorsen; Karina D Sørensen; Anne Sofie Brems-Eskildsen; Charlotte Modin; Mette Gaustadnes; Anne-Mette K Hein; Mogens Kruhøffer; Søren Laurberg; Michael Borre; Kai Wang; Søren Brunak; Adrian R Krainer; Niels Tørring; Lars Dyrskjøt; Claus L Andersen & Torben F Orntoft

    Mol Cell Proteomics, Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University Hospital, Skejby, DK-8200 Aarhus N, Denmark., 7, 1214-1224

    http://dx.doi.org/10.1074/mcp.M700590-MCP200

  • Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells
    Malene Herbsleb; Karin Birkenkamp-Demtroder; Thomas Thykjaer; Carsten Wiuf; Anne-Mette K Hein; Torben F Orntoft & Lars Dyrskjøt

    BMC Med Genomics, Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University Hospital, Skejby, Brendstrupgaardsvej 100, DK-8200 Aarhus N, Denmark. lars@ki.au.dk., 1, 31

    http://dx.doi.org/10.1186/1755-8794-1-31

  • Assembly and structural analysis of a covalently closed nano-scale DNA cage
    Andersen FF, Knudsen B, Oliveira CL, Frøhlich RF, Krüger D, Bungert J, Agbandje-McKenna M, McKenna R, Juul S, Veigaard C, Koch J, Rubinstein JL, Guldbrandtsen B, Hede MS, Karlsson G, Andersen AH, Pedersen JS, Knudsen BR

    Nucleic Acids Res. 2008 Mar;36(4):1113-9. Epub 2007 Dec 20.

    http://www.ncbi.nlm.nih.gov/pubmed/18096620

2007

  • The conserved cysteine-rich domain of a tesmin/TSO1-like protein binds zinc in vitro and TSO1 is required for both male and female fertility in Arabidopsis thaliana
    Andersen SU, Algreen-Petersen RG, Hoedl M, Jurkiewicz A, Cvitanich C, Braunschweig U, Schauser L, Oh SA, Twell D, Jensen EØ

    J Exp Bot. 2007;58(13):3657-70

    http://jxb.oxfordjournals.org/content/58/13/3657.long

  • Active Signal Processing: A Counter-intuitive Approach to Enhancing Signal-to-Noise Ratio via Noise Injection
    T. George, S. Gulati, S. Menahem, J. Breaux, C.Boysen, V. Daggumati, R. Quon

    Material Research Society Proceedings: Electronic Paper 0952-F01, 2007

    http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=8015293

  • Linear-scaling implementation of molecular response theory in self-consistent field electronic-structure theory
    Coriani, S.; Høst, S.; Jansik, B.; Thøgersen, L.; Olsen, J.; Jørgensen, P.; Reine, S.; Pawlowski, F.; Helgaker, T.; Salek, P.

    J. Chem. Phys. 126, 154108-1 - 154108-11 (2007)

    http://jcp.aip.org/resource/1/jcpsa6/v126/i15/p154108_s1?isAuthorized=no

  • Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.
    Pel HJ, de Winde JH, Archer DB, et al.

    Nat Biotechnol. 2007 Feb;25(2):221-31. Epub 2007 Jan 28

    http://www.ncbi.nlm.nih.gov/pubmed/17259976

  • Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments
    Agim Ballvora, Anika Jöcker, Prisca Viehöver, Hirofumi Ishihara, Jürgen Paal, Khalid Meksem, Rémy Bruggmann, Heiko Schoof, Bernd Weisshaar and Christiane Gebhardt

    BMC Genomics 2007, 8:112 doi:10.1186/1471-2164-8-112

    http://www.biomedcentral.com/1471-2164/8/112

  • New bioinformatic strategies to rapidly characterize retroviral integration sites of gene therapy vectors
    Giordano FA, Hotz-Wagenblatt A, Lauterborn D, Appelt JU, Fellenberg K, Nagy KZ, Zeller WJ, Suhai S, Fruehauf S, Laufs S.

    Methods Inf Med. 2007;46(5):542-7

    http://www.ncbi.nlm.nih.gov/pubmed/17938776

  • Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
    Pel et al.

    Nat Biotechnol, DSM Food Specialties, PO Box 1, 2600 MA Delft, The Netherlands., 25, 221-231

    http://dx.doi.org/10.1038/nbt1282

  • Gene Expression Signatures Predict Outcome in Non-Muscle-Invasive Bladder Carcinoma: A Multicenter Validation Study
    Dyrskjot, L.; Zieger, K.; Real, F.X.; Malats, N.; Carrato, A.; Hurst, C.; Kotwal, S.; Knowles, M.; Malmstrom, P.U.; de la Torre, M. & others

    Clinical Cancer Research, AACR, 13, 3545

  • Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
    Pel et al.

    Nat Biotechnol, 25, 221-231

    http://dx.doi.org/10.1038/nbt1282

  • BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
    Ernest Turro; Natalia Bochkina; Anne-Mette K Hein & Sylvia Richardson

    BMC Bioinformatics, Centre for Biostatistics, Imperial College London, UK. ernest.turro@ic.ac.uk, 8, 439

    http://dx.doi.org/10.1186/1471-2105-8-439

  • Incorporating experimental design and error into coalescent/mutation models of population history
    Bjarne Knudsen & Michael M Miyamoto

    Genetics

    http://dx.doi.org/10.1534/genetics.106.063560

  • Incorporating experimental design and error into coalescent/mutation models of population history
    Knudsen B, Miyamoto MM

    Genetics Aug;176(4):2335-42. Epub 2007 Jun 11.PMID: 17565962

    http://www.ncbi.nlm.nih.gov/pubmed/17565962

  • Semiautomated improvement of RNA alignments
    Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J.

    RNA Nov;13(11):1850-9. Epub 2007 Sep 5.

    http://www.ncbi.nlm.nih.gov/pubmed/17804647

2006

  • GeneRecon–a coalescent based tool for fine-scale association mapping
    Mailund T, Schierup MH, Pedersen CN, Madsen JN, Hein J, Schauser L

    Bioinformatics. 2006 Sep 15;22(18):2317-8

    http://bioinformatics.oxfordjournals.org/content/22/18/2317.long

  • GeMprospector–online design of cross-species genetic marker candidates in legumes and grasses
    Fredslund J, Madsen LH, Hougaard BK, Sandal N, Stougaard J, Bertioli D, Schauser L

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W670-5

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538858/

  • A general pipeline for the development of anchor markers for comparative genomics in plants
    Fredslund J, Madsen LH, Hougaard BK, Nielsen AM, Bertioli D, Sandal N, Stougaard J, Schauser L

    BMC Genomics. 2006 Aug 14;7:207

    http://www.biomedcentral.com/1471-2164/7/207

  • Regulation of flowering in the long-day grass Lolium temulentum by gibberellins and the FLOWERING LOCUS T gene
    King RW, Moritz T, Evans LT, Martin J, Andersen CH, Blundell C, Kardailsky I, Chandler PM.

    Plant Physiol. 2006 June; 141(2): 498–507. doi: 10.1104/pp.106.076760

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1475477/

  • Evaluation of DNA microarray results with quantitative gene expression platforms
    R. Canales, Y. Luo, J. C. Willey, B. Austermiller, C. C. Barbacioru, C. Boysen, et al.

    Nature Biotechnology, 24, 1115-1122, 2006

    http://www.nature.com/nbt/journal/v24/n9/full/nbt1236.html

  • Using RNA sample titrations to assess microarray platform performance and normalization techniques
    R. Shippy, S. Fulmer-Smentek, R. V. Jensen, W. D. Jones, P. K. Wolber, C. D. Johnson, P. S. Pine, C. Boysen, et al.

    Nature Biotechnology, 24, 1123-1131, 2006

    http://www.ncbi.nlm.nih.gov/pubmed/16964226

  • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    MAQC Consortium

    Nature Biotechnology, 24, 1151-1161, 2006

    http://www.nature.com/nbt/journal/v24/n9/abs/nbt1239.html

  • Retroviral vector insertions in T-lymphocytes used for suicide gene therapy occur in gene groups with specific molecular functions
    Giordano FA, Fehse B, Hotz-Wagenblatt A, Jonnakuty S, del Val C, Appelt JU, Nagy KZ, Kuehlcke K, Naundorf S, Zander AR, Zeller WJ, Ho AD, Fruehauf S, Laufs S.

    Bone Marrow Transplant. 2006 Aug;38(3):229-35

    http://www.ncbi.nlm.nih.gov/pubmed/16785865

  • MolDock: A New Technique for High-Accuracy Molecular Docking
    Thomsen R, Christensen MH

    J. Med. Chem. 2006

    http://pubs.acs.org/doi/abs/10.1021/jm051197e

  • Porcine APP cDNAs: molecular cloning and characterization, expression analysis, chromosomal localization and SNP analysis
    Marianne Abildgaard Oerum; Christian Bendixen; Lone Bruhn Madsen & Knud Larsen

    Biochim Biophys Acta, 1759, 378-384

    http://dx.doi.org/10.1016/j.bbaexp.2006.06.002

  • Neuronal transcriptome of aplysia: neuronal compartments and circuitry
    Moroz et al.

    Cell, 127, 1453-1467

    http://dx.doi.org/10.1016/j.cell.2006.09.052

  • A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
    Anne-Mette K Hein & Sylvia Richardson

    BMC Bioinformatics, Dept. of Epidemiology and Public Health, Imperial College London, Norfolk Place, London, UK. a.hein@imperial.ac.uk, 7, 353

    http://dx.doi.org/10.1186/1471-2105-7-353

  • Protein Functional Annotation through Phylogenomics-Based Bayesian Inference

2005

  • Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus
    Schauser L, Wieloch W, Stougaard J

    J Mol Evol. 2005 Feb;60(2):229-37

    http://link.springer.com/article/10.1007%2Fs00239-004-0144-2

  • PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs
    Fredslund J, Schauser L, Madsen LH, Sandal N, Stougaard J

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W516-20

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160186/

  • CoaSim: a flexible environment for simulating genetic data under coalescent models
    Mailund T, Schierup MH, Pedersen CN, Mechlenborg PJ, Madsen JN, Schauser L

    BMC Bioinformatics. 2005 Oct 14;6:252

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1274299/

  • LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus
    Madsen LH, Fukai E, Radutoiu S, Yost CK, Sandal N, Schauser L, Stougaard J

    Plant J. 2005 Nov;44(3):372-81

    http://www.ncbi.nlm.nih.gov/pubmed/16236148

  • Interchromosomal segmental duplications explain the unusual structure of PRSS3, the gene for an inhibitor-resistant trypsinogen
    L.Rowen, E.Williams, G. Glusman, E. Linardopoulou, C. Friedman, M. E. Ahearn, J. Seto, C. Boysen, et al.

    Molecular Biology and Evolution 22, 1712-1720, 2005

    http://www.ncbi.nlm.nih.gov/pubmed/15901841

  • The trust-region self-consistent field method in Kohn-Sham density-functional theory
    Thøgersen, L.; Olsen, J.; Köhn, A.; Jørgensen, P.; Salek, P.; Helgaker, T.

    J. Chem. Phys. 123, 074103-1 - 074103-17 (2005)

  • Non-classical protein secretion in bacteria
    Bendtsen JD, Kiemer L, Fausbøll A, Brunak S.

    BMC Microbiol. 2005 Oct 7;5:58

    http://www.ncbi.nlm.nih.gov/pubmed/16212653

  • Genome update: prediction of membrane proteins in prokaryotic genomes
    Bendtsen JD, Binnewies TT, Hallin PF, Ussery DW.

    Microbiology. 2005 Jul;151(Pt 7):2119-21

    http://www.ncbi.nlm.nih.gov/pubmed/16000701

  • Prediction of twin-arginine signal peptides
    Bendtsen JD, Nielsen H, Widdick D, Palmer T, Brunak S.

    BMC Bioinformatics. 2005 Jul 2;6:167

    http://www.ncbi.nlm.nih.gov/pubmed/15992409

  • Genome update: prediction of secreted proteins in 225 bacterial proteomes
    Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pontén T, Ussery DW.

    Microbiology. 2005 Jun;151(Pt 6):1725-7. Review. No abstract available

    http://www.ncbi.nlm.nih.gov/pubmed/15941981

  • Genome Update: Protein secretion systems in 225 bacterial genomes
    Binnewies TT, Bendtsen JD, Hallin PF, Nielsen N, Wassenaar TM, Pedersen MB, Klemm P, Ussery DW.

    Microbiology. 2005 Apr;151(Pt 4):1013-6. No abstract available

    http://www.ncbi.nlm.nih.gov/pubmed/15817770

  • Mobility Work – The Spatial Dimension of Collaboration at a Hospital
    Bardram, Jakob E. and Bossen, Claus

    Journal of Computer Supported Cooperative Work, 14(2), p. 131-160, 2005

    http://www.springerlink.com/content/p7j61876q72v34tx/

  • The Java Context Awareness Framework (JCAF) – A Service Infrastructure and Programming Framework for Context-Aware Applications
    Bardram, Jakob E.

    Hans Gellersen, Roy Want, and Albrecht Schmidt, editors, Proceedings of the 3rd International Conference on Pervasive Computing (Pervasive 2005), Lecture Notes in Computer Science, Munich, Germany, May 2005. Springer Verlag

    http://www.springerlink.com/content/yl2fen8clqqwq2tb/

  • Activity-Based Computing: Support for Mobility and Collaboration in Ubiquitous Computing
    Bardram, Jakob E.

    Personal and Ubiquitous Computing, July 2005

    http://www.springerlink.com/content/jxun3bchcty1l743/

  • From Desktop Task Management to Ubiquitous Activity-Based Computing
    Bardram, Jakob E.

    Victor Kaptelinin and Mary Czerwinski, editors, Integrated Digital Work Environments: Beyond the Desktop Metaphor. MIT Press, 2005

  • The Trouble with Login – On Usability and Computer Security in Ubiquitous Computing
    Bardram, Jakob E.

    Personal and Ubiquitous Computing, 9(6), Pages 357 - 367

    http://dl.acm.org/citation.cfm?id=1102917&dl=acm&coll=

  • Genome update: prediction of secreted proteins in 225 bacterial proteomes
    Jannick D Bendtsen; Tim T Binnewies; Peter F Hallin; Thomas Sicheritz-Pontén & David W Ussery

    Microbiology, 151, 1725-1727

    http://dx.doi.org/10.1099/mic.0.28029-0

  • Genome update: prediction of membrane proteins in prokaryotic genomes
    Jannick D Bendtsen; Tim T Binnewies; Peter F Hallin & David W Ussery

    Microbiology, 151, 2119-2121

    http://dx.doi.org/10.1099/mic.0.28181-0

  • Genome Update: Protein secretion systems in 225 bacterial genomes
    Tim T Binnewies; Jannick D Bendtsen; Peter F Hallin; Natasja Nielsen; Trudy M Wassenaar; Martin Bastian Pedersen; Per Klemm & David W Ussery

    Microbiology, 151, 1013-1016

    http://dx.doi.org/10.1099/mic.0.27966-0

  • Divergence time of porcine reproductive and respiratory syndrome virus subtypes
    Roald Forsberg

    Mol Biol Evol, 22, 2131-2134

    http://dx.doi.org/10.1093/molbev/msi208

  • Using equilibrium frequencies in models of sequence evolution
    Bjarne Knudsen & Michael M Miyamoto

    BMC Evol Biol, 5, 21

    http://dx.doi.org/10.1186/1471-2148-5-21

  • NetAcet: prediction of N-terminal acetylation sites
    Lars Kiemer; Jannick Dyrløv Bendtsen & Nikolaj Blom

    Bioinformatics, 21, 1269-1270

    http://dx.doi.org/10.1093/bioinformatics/bti130

  • BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
    Anne-Mette K Hein; Sylvia Richardson; Helen C Causton; Graeme K Ambler & Peter J Green

    Biostatistics, Department of Epidemiology and Public Health, Imperial College, Norfolk Place, London W2 1PG, UK. a.hein@imperial.ac.uk, 6, 349-373

    http://dx.doi.org/10.1093/biostatistics/kxi016

  • Tree measures and the number of segregating sites in time-structured population samples
    Roald Forsberg; Alexei J Drummond & Jotun Hein

    BMC Genet, 6, 35

    http://dx.doi.org/10.1186/1471-2156-6-35

  • Prediction of twin-arginine signal peptides
    Jannick Dyrløv Bendtsen; Henrik Nielsen; David Widdick; Tracy Palmer & Søren Brunak

    BMC Bioinformatics, 6, 167

    http://dx.doi.org/10.1186/1471-2105-6-167

  • Using equilibrium frequencies in models of sequence evolution
    Knudsen B, Miyamoto MM

    BMC Evol Biol. Mar 2;5(1):21.PMID: 15743518

    http://www.ncbi.nlm.nih.gov/pubmed/12411592

2004

  • CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence
    Rivas S, Rougon-Cardoso A, Smoker M, Schauser L, Yoshioka H, Jones JD

    EMBO J. 2004 May 19;23(10):2156-65

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC424418/

  • Acceleration of flowering by overexpression of MFT (MOTHER OF FT AND TFL1)
    Yoo SY, Kardailsky I, Lee JS, Weigel D, Ahn JH.

    Mol Cells. 2004 Feb 29;17(1):95-101

    http://www.ncbi.nlm.nih.gov/pubmed/15055534

  • Equilibrium Geometry of the Ethynyl (CCH) Radical
    Szalay, P.G.; Thøgersen, L.S.; Olsen, J.; Kállay, M.; Gauss, J.

    J. Phys. Chem. A. 108, 3030-3034 (2004)

    http://pubs.acs.org/doi/abs/10.1021/jp036885t?journalCode=jpcafh

  • A coupled cluster and full configuration interaction study of CN and CN-
    Thøgersen, L.; Olsen, J.

    Chem. Phys. Lett. 393, 36-43 (2004)

  • The trust-region self-consistent field method: Towards a black-box optimization in Hartree–Fock and Kohn–Sham theories
    Thøgersen, L.; Olsen, J.; Yeager, D.; Jørgensen, P.; Salek, P.; Helgaker, T.

    J. Chem. Phys. 121, 16 (2004)

    http://jcp.aip.org/resource/1/jcpsa6/v121/i1/p16_s1?isAuthorized=no

  • NetAcet: prediction of N-terminal acetylation sites
    Kiemer L, Bendtsen JD, Blom N.

    Bioinformatics. 2005 Apr 1;21(7):1269-70. Epub 2004 Nov 11

    http://www.ncbi.nlm.nih.gov/pubmed/15539450

  • Improved prediction of signal peptides: SignalP 3.0
    Bendtsen JD, Nielsen H, von Heijne G, Brunak S.

    J Mol Biol. 2004 Jul 16;340(4):783-95

    http://www.ncbi.nlm.nih.gov/pubmed/15223320

  • Feature-based prediction of non-classical and leaderless protein secretion
    Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S.

    Protein Eng Des Sel. 2004 Apr;17(4):349-56. Epub 2004 Apr 28

    http://www.ncbi.nlm.nih.gov/pubmed/15115854

  • Development of in vitro transposon assisted signal sequence trapping and its use in screening Bacillus halodurans C125 and Sulfolobus solfataricus P2 gene libraries
    Becker F, Schnorr K, Wilting R, Tolstrup N, Bendtsen JD, Olsen PB.

    J Microbiol Methods. 2004 Apr;57(1):123-33

    http://www.ncbi.nlm.nih.gov/pubmed/15003695

  • Real-time Collaboration in Activity-based Architectures
    Bardram, Jakob E. and Christensen, Henrik B.

    Proceedings of Fourth Working IEEE/IFIP Conference on Software Architecture (WICSA'04), pages 325 - 329. IEEE Press, 2004

  • Architectural Prototyping: An Approach for Grounding Architectural Design and Learning
    Bardram, Jakob E., Christensen, Henrik B. and Hansen, Klaus M.

    Proceedings of Fourth Working IEEE/IFIP Conference on Software Architecture (WICSA'04), pages 15 - 24. IEEE Press, 2004

  • Domain Theory for Concurrency
    Nygaard, M. and Winskel, G.

    Theoretical Computer Science, 316, Pages 153-190

    http://www.sciencedirect.com/science/article/pii/S0304397504000829

  • Applications of Context-Aware Computing in Hospital Work Ð Examples and Design Principles
    Bardram, Jakob E.

    Proceedings of ACM Symposium on Applied Computing (ACM SAC) 2004, pages 1574-1579. ACM Press, 2004

    http://dl.acm.org/citation.cfm?doid=967900.968215

  • Activity-Based Support for Mobility and Collaboration in Ubiquitous Computing
    Bardram, Jakob E.

    Luciano Baresi, editor, Proceedings of the Second International Conference on Ubiquitous Mobile Information and Collaboration Systems, Lecture Notes in Computer Science, pages 169 - 184, Riga, Latvia, September 2004. Springer Verlag

    http://www.springerlink.com/content/nua7y3v0845mvrc5/

  • The AWARE architecture: supporting context-mediated social awareness in mobile cooperation
    Bardram, Jakob E. and Hansen, Thomas R.

    Proceedings of the 2004 ACM conference on Computer supported cooperative work, pages 192 - 201. ACM Press, 2004

    http://dl.acm.org/citation.cfm?doid=1031607.1031639

  • Development of in vitro transposon assisted signal sequence trapping and its use in screening Bacillus halodurans C125 and Sulfolobus solfataricus P2 gene libraries
    Fiona Becker; Kirk Schnorr; Reinhard Wilting; Niels Tolstrup; Jannick Dyrløv Bendtsen & Peter Bjarke Olsen

    J Microbiol Methods, 57, 123-133

    http://dx.doi.org/10.1016/j.mimet.2003.12.002

  • Role of the trans-activation response element in dimerization of HIV-1 RNA
    Ebbe S Andersen; Sonia Antoranz Contera; Bjarne Knudsen; Christian K Damgaard; Flemming Besenbacher & Jørgen Kjems

    J Biol Chem, 279, 22243-22249

    http://dx.doi.org/10.1074/jbc.M314326200

  • RNA interactions in the 5′ region of the HIV-1 genome
    Christian Kroun Damgaard; Ebbe Sloth Andersen; Bjarne Knudsen; Jan Gorodkin & Jørgen Kjems

    J Mol Biol, 336, 369-379

    http://linkinghub.elsevier.com/retrieve/pii/S0022283603014797

  • Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus
    Katja Einer-Jensen; Peter Ahrens; Roald Forsberg & Niels Lorenzen

    J Gen Virol, 85, 1167-1179

  • Evolutionary rate variation and RNA secondary structure prediction
    B. Knudsen; E. S. Andersen; C. Damgaard; J. Kjems & J. Gorodkin

    Comput Biol Chem, 28, 219-226

    http://dx.doi.org/10.1016/j.compbiolchem.2004.04.001

  • Evolutionary divergence of thyrotropin receptor structure
    Bjarne Knudsen & Nadir R Farid

    Mol Genet Metab, 81, 322-334

    http://dx.doi.org/10.1016/j.ymgme.2004.01.010

  • A comparative method for finding and folding RNA secondary structures within protein-coding regions
    Jakob Skou Pedersen; Irmtraud Margret Meyer; Roald Forsberg; Peter Simmonds & Jotun Hein

    Nucleic Acids Res, 32, 4925-4936

    http://dx.doi.org/10.1093/nar/gkh839

  • An evolutionary model for protein-coding regions with conserved RNA structure
    Jakob Skou Pedersen; Roald Forsberg; Irmtraud Margret Meyer & Jotun Hein

    Mol Biol Evol, 21, 1913-1922

    http://dx.doi.org/10.1093/molbev/msh199

  • Evolutionary rate variation and RNA secondary structure prediction
    B. Knudsen; E. S. Andersen; C. Damgaard; J. Kjems & J. Gorodkin

    Comput Biol Chem, 28, 219-226

    http://dx.doi.org/10.1016/j.compbiolchem.2004.04.001

  • Improved prediction of signal peptides: SignalP 3.0
    Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne & Søren Brunak

    J Mol Biol, 340, 783-795

    http://dx.doi.org/10.1016/j.jmb.2004.05.028

  • Feature-based prediction of non-classical and leaderless protein secretion
    Jannick Dyrløv Bendtsen; Lars Juhl Jensen; Nikolaj Blom; Gunnar Von Heijne & Søren Brunak

    Protein Eng Des Sel, 17, 349-356

    http://dx.doi.org/10.1093/protein/gzh037

2003

  • The Sym35 gene required for root nodule development in pea is an ortholog of Nin from Lotus japonicus
    Borisov AY, Madsen LH, Tsyganov VE, Umehara Y, Voroshilova VA, Batagov AO, Sandal N, Mortensen A, Schauser L, Ellis N, Tikhonovich IA, Stougaard J

    Plant Physiol. 2003 Mar;131(3):1009-17

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC166866/

  • Domain Theory for Concurrency
    Nygaard, M.

    PhD Dissertation, University of Aarhus

    http://www.daimi.au.dk/~nygaard/pub/thesis.pdf

  • Full Abstraction for HOPLA
    Nygaard, M. and Winskel, G.

    Proceedings of CONCUR'03, LNCS 2761, Springer-Verlag

    http://www.springerlink.com/content/1b367r6j8watxprh

  • Context-Aware User Authentication – Supporting Proximity-Based Login in Pervasive Computing
    Bardram, J. E., Kjær, R. E. and Pedersen, M. Ø.

    A. Dey, J. McCarthy, and A. Schmidt, editors, Proceedings of Ubicomp 2003: Ubiquitous Computing, volume 2864 of Lecture Notes in Computer Science, pages 107Ð123, Seattle, Washington, USA, Oct. 2003. Springer Verlag

    http://www.daimi.au.dk/~bardram/docs/bardram.ubicomp2003.pdf

  • Supporting local mobility in healthcare by application roaming among heterogeneous devices
    Bardram, Jakob E., Kjær, T. A. K. and Nielsen, C.

    Proceedings of the Fifth International Conference on Human Computer Interaction with Mobile Devices and Services. Springer Verlag, 2003

    http://www.daimi.au.dk/~bardram/docs/mobile_HCI.pdf

  • Evolution of the thyrotropin receptor: a G protein coupled receptor with an intrinsic capacity to dimerize
    Kaczur et al.

    Mol Genet Metab, 78, 275-290

    http://linkinghub.elsevier.com/retrieve/pii/S1096719203000362

  • tmRDB (tmRNA database)
    Christian Zwieb; Jan Gorodkin; Bjarne Knudsen; Jody Burks & Jacek Wower

    Nucleic Acids Res, 31, 446-447

  • SRPDB: Signal Recognition Particle Database
    Magnus Alm Rosenblad; Jan Gorodkin; Bjarne Knudsen; Christian Zwieb & Tore Samuelsson

    Nucleic Acids Res, 31, 363-364

  • Inferring evolutionary rates using serially sampled sequences from several populations
    Allen G Rodrigo; Matthew Goode; Roald Forsberg; Howard A Ross & Alexei Drummond

    Mol Biol Evol, 20, 2010-2018

    http://dx.doi.org/10.1093/molbev/msg215

  • Using evolutionary rates to investigate protein functional divergence and conservation. A case study of the carbonic anhydrases
    Bjarne Knudsen; Michael M Miyamoto; Philip J Laipis & David N Silverman

    Genetics, 164, 1261-1269

  • Sequence alignments and pair hidden Markov models using evolutionary history
    Bjarne Knudsen & Michael M Miyamoto

    J Mol Biol, 333, 453-460

  • Pfold: RNA secondary structure prediction using stochastic context-free grammars
    Bjarne Knudsen & Jotun Hein

    Nucleic Acids Res, 31, 3423-3428

  • A codon-based model of host-specific selection in parasites, with an application to the influenza A virus
    Roald Forsberg & Freddy Bugge Christiansen

    Mol Biol Evol, 20, 1252-1259

    http://dx.doi.org/10.1093/molbev/msg149

2002

  • Ubiquitin ligase-associated protein SGT1 is required for host and nonhost disease resistance in plants
    Peart JR, Lu R, Sadanandom A, Malcuit I, Moffett P, Brice DC, Schauser L, Jaggard DA, Xiao S, Coleman MJ, Dow M, Jones JD, Shirasu K, Baulcombe DC

    Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10865-9

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC125064/

  • Genomic analysis of the olfactory receptor region of the mouse and human T-cell receptor a/d region
    R. P. Lane, J. C. Roach, I. Y. Lee, C. Boysen, A. Smit, B. J. Trask, and L. Hood

    Genome Research 12, 81-87, 2002

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC155264/

  • Stability, Metastability, and Unstability of Three-Electron-Bonded Radical Anions. A Model ab Initio Theoretical Study
    Braïda, B.; Thøgersen, L.; Wu, W.; Hiberty, P.C.

    J. Am. Chem. Soc. 124, 11781-11790 (2002)

    http://pubs.acs.org/doi/abs/10.1021/ja026707y?journalCode=jacsat

  • Phylogenetic and functional analysis of the bacteriophage P1 single-stranded DNA-binding protein
    Bendtsen JD, Nilsson AS, Lehnherr H.

    J Virol. 2002 Oct;76(19):9695-701

    http://www.ncbi.nlm.nih.gov/pubmed/12208948

  • Linearity in Process Languages
    Nygaard, M. and Winskel, G.

    Proceedings of LICS'02, IEEE

  • HOPLA – A Higher-Order Process Language
    Nygaard, M. and Winskel, G.

    Proceedings of CONCUR'02, LNCS 2421, Springer-Verlag

    http://www.springerlink.com/content/b3yv58c4np9k23t1

  • Supporting Human Activities Ñ Exploring Activity-Centered Computing
    Christensen, H. B. and Bardram, J. E.

    Proceeding of Ubiquitous Computing 2002 (UBICOMP 2002), Springer LNCS 2498, Berlin, 2002

  • The missing link: augmenting biology laboratory notebooks
    Wendy E. Mackay, Guillaume Pothier, Catherine Letondal, Kaare Bøegh and Hans Erik Sørensen

    Proceedings of the 15th annual ACM symposium on User interface software and technology. ACM Press, 2002

    http://dl.acm.org/citation.cfm?doid=571985.571992

  • Phylogenetic and functional analysis of the bacteriophage P1 single-stranded DNA-binding protein
    Jannick Dyrløv Bendtsen; Anders S Nilsson & Hansjörg Lehnherr

    J Virol, 76, 9695-9701

    http://jvi.asm.org/cgi/content/full/76/19/9695?view=long&pmid=122089

  • The genetic diversity of European type PRRSV is similar to that of the North American type but is geographically skewed within Europe
    Roald Forsberg; Torben Storgaard; Henriette S Nielsen; Martin B Oleksiewicz; Paolo Cordioli; Giovanni Sala; Jotun Hein & Anette Bøtner

    Virology, 299, 38-47

  • Transcriptional regulation of the stem cell leukemia gene (SCL)–comparative analysis of five vertebrate SCL loci
    Berthold Göttgens; Linda M Barton; Michael A Chapman; Angus M Sinclair; Bjarne Knudsen; Darren Grafham; James G R Gilbert; Jane Rogers; David R Bentley & Anthony R Green

    Genome Res, 12, 749-759

    http://dx.doi.org/10.1101/gr.45502

2001

  • Comparative genomics of the human and mouse T cell receptor loci
    G. Glusman, L. Rowen, I. Lee, C. Boysen, J. C. Roach, A. F. A. Smit, K. Wang, B. F. Koop, L. Hood

    Immunity 15, 337-349, 2001

    http://www.ncbi.nlm.nih.gov/pubmed/11567625

  • Initial sequencing and analysis of the human genome
    International Human Genome Sequencing Consortium

    Nature 409, 860-921, 2001

    http://www.nature.com/nature/journal/v409/n6822/full/409860a0.html

  • Investigation of some starting protocols for BDF (FIRM) in electrochemical digital simulation
    Britz, D.; Strutwolf, J.; Thøgersen, L.

    J. Electroanal. Chem. 512, 119-123 (2001)

    http://www.sciencedirect.com/science/article/pii/S0022072801005733

  • Genetic heterogeneity of SAT-1 type foot-and-mouth disease viruses in southern Africa
    A. D. Bastos; D. T. Haydon; R. Forsberg; N. J. Knowles; E. C. Anderson; R. G. Bengis; L. H. Nel & G. R. Thomson

    Arch Virol, 146, 1537-1551

    http://www.ncbi.nlm.nih.gov/pubmed/11676416

  • A molecular clock dates the common ancestor of European-type porcine reproductive and respiratory syndrome virus at more than 10 years before the emergence of disease
    R. Forsberg; M. B. Oleksiewicz; A. M. Petersen; J. Hein; A. Bøtner & T. Storgaard

    Virology, 289, 174-179

    http://dx.doi.org/10.1006/viro.2001.1102

  • Reversion of a live porcine reproductive and respiratory syndrome virus vaccine investigated by parallel mutations
    H. S. Nielsen; M. B. Oleksiewicz; R. Forsberg; T. Stadejek; A. Bøtner & T. Storgaard

    J Gen Virol, 82, 1263-1272

  • tmRDB (tmRNA database)
    B. Knudsen; J. Wower; C. Zwieb & J. Gorodkin

    Nucleic Acids Res, 29, 171-172

  • SRPDB (Signal Recognition Particle Database)
    J. Gorodkin; B. Knudsen; C. Zwieb & T. Samuelsson

    Nucleic Acids Res, 29, 169-170

  • A dependent-rates model and an MCMC-based methodology for the maximum-likelihood analysis of sequences with overlapping reading frames
    A. M. Pedersen & J. L. Jensen

    Mol Biol Evol, Department of Theoretical Statistics, Institute of Mathematics, University of Aarhus, Denmark. annemet@imf.au.dk, 18, 763-776

  • A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins
    B. Knudsen & M. M. Miyamoto

    Proc Natl Acad Sci U S A, 98, 14512-14517

    http://dx.doi.org/10.1073/pnas.251526398

  • A Molecular Clock Dates the Common Ancestor of European-type Porcine Reproductive and Respiratory Syndrome Virus at More Than 10 Years before the Emergence of Disease
    Forsberg, R.; Oleksiewicz, M.B.; Krabbe Petersen, A.M.; Hein, J.; Bøtner, A. & Storgaard, T.

    Virology, Elsevier, 289, 174-179

  • The inference of stepwise changes in substitution rates using serial sequence samples
    A. Drummond; R. Forsberg & A. G. Rodrigo

    Mol Biol Evol, 18, 1365-1371

2000

  • The Lotus japonicus LjSym4 gene is required for the successful symbiotic infection of root epidermal cells
    Bonfante P, Genre A, Faccio A, Martini I, Schauser L, Stougaard J, Webb J, Parniske M

    Mol Plant Microbe Interact. 2000 Oct;13(10):1109-20

    http://apsjournals.apsnet.org/doi/abs/10.1094/MPMI.2000.13.10.1109

  • Transformation of Medicago truncatula via infiltration of seedlings or flowering plants with Agrobacterium
    Trieu, A. T., Burleigh, S. H., Kardailsky, I. V., et al.

    The Plant Journal, 22: 531–541. doi: 10.1046/j.1365-313x.2000.00757.x

    http://www.ncbi.nlm.nih.gov/pubmed/10886773

  • Activation tagging in Arabidopsis
    Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, et al.

    Plant Physiology April 2000 vol. 122 no. 4 1003-1014 doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​122.​4.​1003

    http://www.plantphysiol.org/content/122/4/1003.full

  • Physical interaction between Wilms tumor 1 and p73 proteins modulates their functions
    Scharnhorst V, Dekker P, van der Eb AJ, Jochemsen AG

    J Biol Chem. 2000 Apr 7;275(14):10202-11

    http://www.ncbi.nlm.nih.gov/pubmed/10744705

  • Temporal Coordination: On Time and Coordination of Collaborative Activities at a Surgical Department
    Bardram, Jakob E.

    Journal of Computer Supported Cooperative Work, 9: p. 157-187

    http://www.springerlink.com/content/l3843057175m4118/

  • Scenario-Based Design of Cooperative Systems – Re-designing an Hospital Information System in Denmark
    Bardram, Jakob E.

    Group Decision and Negotiation, 9: p. 237-250

    http://www.daimi.au.dk/~bardram/docs/ScenarioBasedDesign_Bardram.pdf

  • Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
    Yang, Z.; Nielsen, R.; Goldman, N. & Pedersen, A.M.K.

    Genetics, Genetics Soc America, 155, 431-449

1999

  • A plant regulator controlling development of symbiotic root nodules
    Schauser L, Roussis A, Stiller J, Stougaard J

    Nature. 1999 Nov 11;402(6758):191-5

    http://www.ncbi.nlm.nih.gov/pubmed/10647012

  • Acceleration of Flowering by Overexpression of MFT
    SY Yoo, I Kardailsky, JS Lee, D Weigel, JH Ahn

    Mol. Cells 17 (1), 95-101

  • Activation tagging of the floral inducer FT
    Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D.

    Science 3 December 1999: 286 (5446), 1962-1965. DOI:10.1126/science.286.5446.1962

    http://www.ncbi.nlm.nih.gov/pubmed/10583961

  • Identification and characterization of the single-stranded DNA-binding protein of bacteriophage P1
    Lehnherr H, Bendtsen JD, Preuss F, Ilyina TV.

    J Bacteriol. 1999 Oct;181(20):6463-8

    http://www.ncbi.nlm.nih.gov/pubmed/10515938

  • Internal translation initiation generates novel WT1 protein isoforms with distinct biological properties
    Scharnhorst V, Dekker P, van der Eb AJ, Jochemsen AG

    J Biol Chem. 1999 Aug 13;274(33):23456-62

    http://www.ncbi.nlm.nih.gov/pubmed/10438524

  • Identification and characterization of the single-stranded DNA-binding protein of bacteriophage P1
    H. Lehnherr; J. D. Bendtsen; F. Preuss & T. V. Ilyina

    J Bacteriol, 181, 6463-6468

    http://jb.asm.org/cgi/content/full/181/20/6463?view=long&pmid=10515938

  • RNA secondary structure prediction using stochastic context-free grammars and evolutionary history
    B. Knudsen & J. Hein

    Bioinformatics, 15, 446-454

1998

  • Symbiotic mutants deficient in nodule establishment identified after T-DNA transformation of Lotus japonicus
    Schauser L, Handberg K, Sandal N, Stiller J, Thykjaer T, Pajuelo E, Nielsen A, Stougaard J

    Mol Gen Genet. 1998 Sep;259(4):414-23

    http://www.ncbi.nlm.nih.gov/pubmed/9790598

  • Symbiotic gene sym31 controls the presence of a lectinlike glycoprotein in the symbiosome compartment of nitrogen-fixing pea nodules
    P Dahiya, DJ Sherrier, IV Kardailsky, AY Borisov, NJ Brewin

    Molecular plant-microbe interactions 11 (9), 915-923

    http://apsjournals.apsnet.org/doi/abs/10.1094/MPMI.1998.11.9.915

  • Designing for the Dynamics of Cooperative Work Activities
    Bardram, Jakob E.

    Proceedings of The 1998 ACM Conference on Computer Supported Cooperative Work, Seattle, Washington, USA. ACM Press

    http://dl.acm.org/citation.cfm?doid=289444.289483

  • A codon-based model designed to describe lentiviral evolution
    A. K. Pedersen; C. Wiuf & F. B. Christiansen

    Mol Biol Evol, Institute of Biological Sciences, University of Aarhus, Denmark. annemet@pop.bio.aau.dk, 15, 1069-1081

1997

1996

  • Flower Development in Weeds and Trees
    Weigel, Detlef; Blazquez, Miguel; Brentt, Dana R.; Christensen, Sioux; Kardailsky, Igor; et al.

    Plant Physiology Rockville 111 (2 suppl.)

    http://digitalcommons.usu.edu/aspen_bib/1612

  • Localization of lipoxygenase proteins and mRNA in pea nodules: Identification of lipoxygenase in the lumen of infection threads
    CD Gardner, DJ Sherrier, IV Kardailsky, NJ Brewin

    MPMI-Molecular Plant Microbe Interactions 9 (4), 282-289

    http://openagricola.nal.usda.gov/Record/IND20520154

  • Identification of a new pea gene, PsNlec1, encoding a lectin-like glycoprotein isolated from the symbiosomes of root nodules
    IV Kardailsky, DJ Sherrier, NJ Brewin

    Plant Physiol. 1996 May; 111(1): 49–60

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC157812/

  • Expression of cysteine protease genes in pea nodule development and senescence
    Kardailsky IV, Brewin NJ.

    Mol Plant Microbe Interact. 1996 Nov;9(8):689-95

    http://www.ncbi.nlm.nih.gov/pubmed/8870268

  • Construction and characterization of a human Bacterial Artificial Chromosome library
    U.-J. Kim, B. Birren, Y.-L. Sheng, T. Slepak, V. Mancino, C. Boysen, H.-L. Kang, M. I. Simon, and H. Shizuya

    Genomics 34, 213-218, 1996

    http://www.ncbi.nlm.nih.gov/pubmed/8661051

  • Analysis of the human T cell receptor / locus. New approaches to mapping and sequencing
    C. Boysen

    Thesis for the Ph. D. degree in biology/immunology, Division of Biology, California Institute of Technology, 1996

  • Identifying DNA polymorphisms in human TCRA/D variable genes by direct sequencing of PCR products
    C. Boysen, C. Carlson, E. Hood, L. E. Hood, and D. A. Nickerson

    Immunogenetics 44, 121-127, 1996

    http://www.ncbi.nlm.nih.gov/pubmed/8662074

  • MDMX: a novel p53-binding protein with some functional properties of MDM2
    A Shvarts, W T Steegenga, N Riteco, T van Laar, P Dekker, M Bazuine, R C van Ham, W van der Houven van Oordt, G Hateboer, A J van der Eb, and A G Jochemsen

    EMBO J. 1996 October 1; 15(19): 5349–5357

    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC452278/

1995

  • PZF, a cDNA isolated from Lotus japonicus and soybean root nodule libraries, encodes a new plant member of the RING-finger family of zinc-binding proteins
    Schauser L, Christensen L, Borg S, Poulsen C

    Plant Physiol. 1995 Apr;107(4):1457-8

    http://www.ncbi.nlm.nih.gov/pubmed/7770533

  • A new Lectin-Type Glycoprotein Identified in the Peribacteroid Fluid of Pea Nodules
    IV Kardailsky, NJ Brewin

    Advances in Molecular Genetics of Plant-Microbe Interactions Current Plant Science and Biotechnology in Agriculture Volume 21, 1994, pp 139-142

    http://link.springer.com/chapter/10.1007%2F978-94-011-0177-6_21

  • The Rhizobium-legume interface in pea root nodules: studies of nodulins, glycoproteins and proteases
    IV Kardailsky

    Ph. D. thesis, University of East Anglia, Norwich. UK

  • Differentiation of the symbiosome compartment in pea nodule cells
    NJ Brewin, L Bolaños, P Dahiya, CD Gardner, LE Hernández, IV Kardailsky, EA Rathbun, DJ Sherrier

    Nitrogen Fixation: Fundamentals and Applications Current Plant Science and Biotechnology in Agriculture Volume 27, 1995, pp 455-460

    http://link.springer.com/chapter/10.1007/978-94-011-0379-4_54#

  • A 200 bp region of the pea ENOD12 promoter is sufficient for nodule-specific and Nod factor induced expression
    Vijn I, Christiansen H, Lauridsen P, Kardailsky I, et al.

    Plant molecular biology 28 (6), 1103-1110

    http://www.ncbi.nlm.nih.gov/pubmed/7548827

  • A microtiter plate-based high-throughput DNA purification method
    K. Wang, L. Gan, C. Boysen, and L. Hood

    Anal. Biochem. 226, 85-90, 1995

    http://www.sciencedirect.com/science/article/pii/S0003269785711955

  • Pairwise end sequencing: a unified approach to genomic mapping and sequencing
    J. C. Roach, C. Boysen, K. Wang, and L. Hood

    Genomics 26, 345-353, 1995

    http://www.ncbi.nlm.nih.gov/pubmed/7601461

1994

  • Bacterial and plant glycoconjugates at the Rhizobium-legume interface
    Brewin NJ, Rae AL, Perotto S, Kannenberg EL, Rathbun EA, Lucas MM, Gunder A, Bolaños L, Kardailsky IV, Wilson KE, et al.

    Biochemical Society symposium 1994;60:61-73

    http://www.ncbi.nlm.nih.gov/pubmed/7639793

1993

1992

  • A comprehensive genetic linkage map of the human genome
    NIH/CEPH collaborative mapping group. H. Donis-Keller, R. Weaver, S. Ramachandra, C. Warlick, A. K. Burgess, J. L. Weber, M. Litt, D. A. Nickerson, C. A. Boysen, L. Hood, and S. K. Mishra: Chromosome 14

    Science, 67-86, 1992

    http://www.ncbi.nlm.nih.gov/pubmed/1439770

  • Identification of clusters of biallelic polymorphic sequence-tagged sites (pSTSs) that generate highly informative and automatable markers for genetic linkage mapping
    D. A. Nickerson, C. Whitehurst, C. Boysen, P. Charmley, R. Kaiser, and L. Hood

    Genomics 12, 377-387, 1992

    http://www.ncbi.nlm.nih.gov/pubmed/1531472

1991

  • Genes of pea (Pisum sativum) forming the symbiotic association with nitrogen-fixing bacteria. II. The nucleotide sequences of the cDNA and of the part of genomic DNA of late nodulin gene Nod6 (PsNod6)
    IV Kardailsky, F Govers, T Bisseling, I Tikhonovich, A Zalensky

    Molekulyarnaya Biologiya 25 (1991) 6 DOI:46161