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Sample & Assay Technologies
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Tutorials

Basic Tutorials

  • An Introduction to Annotation Tracks

    CLC Genomics Workbench

    How to add valuable information to an existing reference track in the CLC Genomics Workbench.

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    Getting Started

    CLC Genomics Workbench, CLC Main Workbench, CLC Sequence Viewer

    A guide to the most basic steps of working with CLC Genomics Workbench, CLC Main Workbench, and CLC Sequence Viewer.

    Available both as a pdf tutorial and a video tutorial.

  • Side Panel Settings

    CLC Genomics Workbench, CLC Main Workbench, CLC Sequence Viewer

    How to use the Side Panel to change the way your sequences, alignments and other data are shown.

  • View a DNA Sequence

    CLC Genomics Workbench, CLC Main Workbench, CLC Sequence Viewer

    This brief tutorial takes you through some different ways to display a sequence in CLC Main Workbench and CLC Genomics Workbench.

High-Throughput Analysis

Drug Discovery

  • Dock Ligands from a 2D Sketch

    CLC Drug Discovery Workbench

    Fast track docking with copy-paste of molecule from 2D sketcher software and one-click docking. It is described how to download and use the freely available program Balloon, which is needed to support the copy-paste of 2D molecule sketches.

  • Exploring Protein-Ligand Binding

    CLC Drug Discovery Workbench

    Protein-ligand binding is explored using molecular docking, to fit the ligand in a binding pocket on the target protein.

  • Exploring your Protein

    CLC Drug Discovery Workbench

    Taking you through some of the sequence analysis and structure visualization features you can use to get to know your target protein.

  • Find and Align Binding Pockets

    CLC Drug Discovery Workbench

    The Find Binding Pockets and Align Protein Structure tools are used to further explore your target protein

  • Getting Started (Drug)

    CLC Drug Discovery Workbench

    The user interface is introduced, and it is explained how to import your own existing data. Furthermore, 10 tips to get the most out of the workbench are presented.

  • Virtual Screening

    CLC Drug Discovery Workbench

    How to set up and run a virtual screening and inspect the results.

Additional Tutorials

  • Aligning Sequences

    CLC Genomics Workbench, CLC Main Workbench, CLC Sequence Viewer

    Outlining some of the alignment functionalities of CLC Main Workbench.

  • Assembly

    CLC Genomics Workbench, CLC Main Workbench

    In this tutorial, you will see how to assemble data from automated sequencers into a contig and how to find and inspect any conflicts that may exist between different reads.

  • BLAST

    CLC Genomics Workbench, CLC Main Workbench, CLC Sequence Viewer

    This tutorial takes you through the steps of running a blast search in CLC Workbenches

  • Detect Restriction Site

    CLC Genomics Workbench, CLC Main Workbench, CLC Sequence Viewer

    How to find restriction sites and annotate them on a sequence.

  • Folding RNA Molecules

    CLC Genomics Workbench, CLC Main Workbench

    Learn how to predict the secondary structure of an RNA molecule.

  • Gateway Cloning

    CLC Genomics Workbench, CLC Main Workbench

    How to use the Workbench tool for in silica Gateway Cloning.

  • In Silico Cloning Workflow

    CLC Genomics Workbench, CLC Main Workbench

    Learn how to make a virtual PCR-amplification of a gene using primers with restriction sites at the 5′ ends and how to insert the gene into a multiple cloning site of an expression vector.

  • Microbial Genome Finishing Module – Using the Align Contigs Tool

    CLC Genomics Workbench

    How to use the Align Contigs tool to identify and join overlapping contigs, and split misassembled contigs.

  • Phylogeny Module - Visualization of Trees and Meta Data

    CLC Genomics Workbench, CLC Main Workbench, CLC Sequence Viewer

    This tutorial will briefly introduce reconstruction of phylogenetic trees and visualization of these with the new tree viewer. The main focus in this tutorial is the visualization of metadata as a powerful tool for analyzing your data.

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    Primer Design

    CLC Genomics Workbench, CLC Main Workbench

    Find out how to use the CLC Main Workbench and CLC Genomics Workbench to find primers for PCR amplification of a specific region.

    Available both as a pdf tutorial and a video tutorial.

  • Tips for Specialized BLAST Searches.

    CLC Genomics Workbench, CLC Main Workbench

    BLAST tips: Find out how to locate a protein sequence on the chromosome.

  • Working with Annotations

    CLC Genomics Workbench, CLC Main Workbench

    This tutorial highlights the areas of the Workbench where you can work with annotations.

Cancer Research